Comments (3)
Thanks for the suggestions. I'll make it happen.
from strainpro.
@nick-youngblut I was wondering if GTDB tax dump files are organized with the same format of NCBI files. If yes, you may specify their path in a text file which looks like below and run StrainPro with "-dump "
NodesDumpFilePath /path/nodes.dmp
MergedDumpFilePath /path/merged.dmp
from strainpro.
Yeah, the GTDB tax dump files are in the same format as the standard NCBI taxdump files. Thanks for quickly creating the -dump
option! I'll give it a try.
btw, my simple code for creating the taxdump files from the GTDB taxonomy can be found at https://github.com/nick-youngblut/gtdb_to_taxdump
from strainpro.
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