honglongwu Goto Github PK

100-days-of-ml-code

100 Days of ML Coding

2013-norwich-bioinfo

2013 advanced bioinformatics workshop at Norwich

2013-norwich-biology

adapterremoval

This program was developed to remove residual adapter sequences from next generation sequencing reads. The program handles both single end and paired end data.

algorithms

Data Structures and Algorithms in Python

algorithms-sedgewick-python

Algorithms(4th edition) by Robert Sedgewick and Kevin Wayne exercises in python

alta

The Art of Literary Text Analysis

an-introduction-to-applied-bioinformatics

Interactive lessons in bioinformatics.

angus

Materials for Analyzing Next-Generation Sequencing (ANGUS) course.

annocript

Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission. It gives information about the longest ORF (using DNA2PEP) and non-coding potential of the sequences (using Portrait). A final heuristic makes Annocript able to identify putative long non-coding RNAs among your transcripts.

asmvar

A software for discovery, genotyping and characterization of structural variants

awesome

A curated list of awesome lists

awesome-machine-learning

A curated list of awesome Machine Learning frameworks, libraries and software.

awesome-python

A curated list of awesome Python frameworks, libraries and software

bam-readcount

count DNA sequence reads in BAM files

basset

Convolutional neural network analysis for predicting DNA sequence activity.

bayesian-biostatistics-2015

bayespy

Bayesian Python: Bayesian inference tools for Python

bc

Template for Software Carpentry bootcamp site repository.

bcbb

Incubator for useful bioinformatics code, primarily in Python and R

bcbio-nextgen

Best-practice pipelines for fully automated high throughput sequencing analysis

bci-challenge-ner-2015

Code and documentation for the winning solution at the BCI Challenge @ NER 2015 : https://www.kaggle.com/c/inria-bci-challenge

bds-files

Supplementary files for my book, "Bioinformatics Data Skills"

beagle-lib

(Unofficial fork of) A general purpose library for evaluating the likelihood of sequence evolution on trees

bedanno

Annotate genomics variations of hg19 by using a BED+1 format database, which construct from ucsc hg19 database

bioc-refcard

Bioconductor cheat sheet

biocode

Bioinformatics script collection

bioinfo

Various bioinformatics tools

bioinformatics

Useful scripts for NGS analysis

bioinformatics-scripts

Miscellaneous bioinformatics scripts in varying states of disrepair