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Hiruna Samarakoon's Projects

artic_c icon artic_c

C/C++ implementation of ARTIC bioinformatics platform for nanopore sequencing of nCoV2019 novel coronavirus

bcftools icon bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

bci-project icon bci-project

An attempt to infer what a person is seeing by analyzing the EEG signals from the scalp outside the visual cortex.

bioawk icon bioawk

BWK now can write output to files and can be built using CMake

bonito icon bonito

A PyTorch Basecaller for Oxford Nanopore Reads

buffonswarm icon buffonswarm

an attempt use buffon's needle area estimation as an heuristic measure for foraging behaviour of a simulated swarm bots

f5c icon f5c

Attempt for a faster implementation of Nanopolish call-methylation in C

f5n icon f5n

Genopo a.k.a. F5N - a portable DNA analysis toolkit for nanopore data https://nanoporetech.com

f5n_server icon f5n_server

This is a job server to distribute sequencing tasks and keep track of clients

f5p icon f5p

Lightweight job scheduler and daemon for nanopore data processing on a mini-cluster

faq icon faq

Frequently Asked Questions

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