Problem with io import about iced HOT 6 CLOSED

I noticed that one of the submodules of this package is named io, which is already the name of a Python library. I'm not very knowledgeable about Python's package systems, but do you think this could be causing my issue?

from iced.

Not in this particular cause, as the error actually comes from the fastio_.c file. If you install pandas, it will pick a better maintain loading mechanism which should hopefully fix this issue.
i'll investigate more on why my hacky c code doesn't work…

from iced.

I may be totally off base here, but my interpretation based on a close reading of the error is:

• numpy looks for tempfile in the right place.
• tempfile looks for built-in io in the wrong place (with iced) but finds something, so no error occurs yet
• io (but your doppelganger, not the built-in one) looks for .fastio and finds it with iced, but expects it to have a certain attribute, and it doesn't.

If I prioritize the path to the built-in io.py (move it earlier in my PYTHONPATH), the issue goes away (and I get a new error, which I will pursue along with your pandas suggestion).

Thanks for looking into this!

from iced.

I honestly was not aware that this piece of code was still here. It was implemented before I realized the csv reader of pandas was really really really fast.

from iced.

Aha! Looks like this has come up before.

nservant/HiC-Pro#43

from iced.

I am going to close this because the fix worked (and apparently it was already known, rather than just something I got lucky on).

from iced.