hengkp's Projects
A catalog of appyter notebooks
ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
Don't Starve mod: Better Console
User-submitted RNA-seq data analysis tools for BioJupies.
This code is for classify single cell data to cell cycle stages from CellProfiler csv output using MATLAB code.
Cell Tracking is a semi-automatic application that be able to track the live cell imaging and turns it into the measured features of interest. With easy steps starting with tracking the segmented nucleus with continuing timepoints, then segmenting some other regions of interest (extended cytoplasm) and measuring its dynamical change of intensity. To add some new daughter cells during mitosis event is also possible with the βgenerate sisterβ mode. The export VDO file of single segmented nucleus or cell can also be created after the tracking process.
The Clustergrammer interactive Jupyter notebook widget
SaezLab's Interns Project 2023
Config files used to define parameters specific to compute environments at different Institutions
A Don't Starve Together mod.
This is an example of single-cell image segmentation using the CellProfiler pipeline.
cyclone
a modeling environment tailored to parameter estimation in dynamical systems
Streamlit app demonstrating an image browser for the Udacity self-driving-car dataset with realtime object detection using YOLO.
Electra: Online Voting Platform
FUCCItrack: an all-in-one software for single cell tracking and cell cycle analysis
H5CellProfiler Converter is an application that converts the exported H5 files from CellProfiler into other formats including .mat and .csv which will help for the further explore with other program/application.
Workshop materials for "I2K 2022: From Images to Knowledge" conference
An ultra-fast LINCS L1000 Characteristic Direction Signature Search Engine
This is an example of live single-cell image segmentation using the CellProfiler pipeline.
Multiple-choice microscopy pipeline
This is a basic python-based example codes for Thai learners about the machine learning used in image recognition.
Create migration-death relationship from would healing assay.
A MakeCode extension for sending and receiving HTTP requests.