Comments (2)
helske
commented on September 27, 2024
I'm not familiar with hmmer3 format, but I don't see why this (or other) formats couldn't be supported if you think the package would be useful for analysing such models. So yes, I'll gladly accept PR especially if it includes a small example case.
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multimeric
commented on September 27, 2024
It's a format used by hmmer which is used for bioinformatics sequence classification (gene, proteins etc). But if you're okay with a specific bioinformatics format being included then I'll think about writing a parser for it.
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Related Issues (20)
- [Help request] How to test the model? HOT 1
- can this package support Multivariate Discrete HMM?? HOT 3
- will it work for multivariate time series prediction : different continues or/and discrete/category observation HOT 4
- HMM cluster assignments HOT 2
- seqdata should be a state sequence object HOT 1
- Apply to financial time series? HOT 1
- 'System seems singular' and 'EM algorithm failed' for Mixture Markov Model HOT 2
- Building a model with different sequence lengths HOT 1
- hidden_paths does not respect sequence length HOT 4
- Parallel computation HOT 2
- Forward probability of MHMM vs HMM HOT 1
- standard errors for HMM parameters HOT 3
- Maximum number of colours in cpal/colorpalette HOT 4
- Extracting combinations of emitted states HOT 4
- Error in if (em.con$reltol < resEM$change) { : argument is of length zero HOT 5
- Absorbing state broken in `build_mm()` (seqhmm 1.2.1-1) HOT 1
- Runtime Estimation HOT 1
- EM algorithm failed HOT 1
- Error: number of labels must equal number of states in the alphabet HOT 4
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