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bgee-unil

React code of the Bgee frontend

bgzip

Fast io streams for block gzip files.

bioconda-recipes-gofigure

Fork of bioconda-recipes for the GO-Figure! package.

biocuration-cockpit

Some (hopefully) useful tools to assist the biocuration process.

c-utils

Utility functions for C/C++ projects

canopy

Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.

cd-bench

Workflow and transformation scripts for Clonal Deconvolution Benchmark

datasharing

The Leek group guide to data sharing

ddclone

ddClone -- Joint clustering of single cell and bulk data

dendropy

A Python library for phylogenetic scripting, simulation, data processing and manipulation.

discomark

Discovery of phylogenetic markers from whole-genome data

iq-tree

Efficient phylogenomic software by maximum likelihood

kat

The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.

mseq-vc

Benchmarking somatic variant calling using multi-regional sequencing data

obonet

OBO-formatted ontologies → networkx (Python 3)

orycun

Supplementary material related to an association study investigating the genetic background underlying RHD survival.

partitionfinder

PartitionFinder discovers optimal partitioning schemes for DNA sequences.

profart

ProfART is a modified version of ART that uses coverage profiles to sample reads at variable depth

scite

scripts

Useful scripts for common bioinformatics tasks

seqan

SeqAn's official repository.

sg-varcall-assignment

simtools

Useful tools in the context of simulating data.

sozi-export

Export Sozi presentations to PDF or video

teiba

Transposable Element Insertion Breakpoint Analyzer (TEIBA)

tumgenomsim

unmix_haplotypes

From a given set of observed haplotypes, infer a minimal set of atomic haplotypes that can serve as their base.

yaml-cpp

A YAML parser and emitter in C++