harshinamdar Goto Github PK

algorithm-problem-solutions

My solutions to problems from ROSALIND, Project Euler, and courses I have taken. This includes my own implementations of various data structures.

assignment

awesome-dataviz

:chart_with_upwards_trend: A curated list of awesome data visualization libraries and resources.

awesome-machine-learning

A curated list of awesome Machine Learning frameworks, libraries and software.

awesome-r

A curated list of awesome R frameworks, packages and software.

bcbio-nextgen

Validated, scalable, community developed variant calling and RNA-seq analysis

bds-files

Supplementary files for my book, "Bioinformatics Data Skills"

bioc-refcard

Bioconductor cheat sheet

bioinformatics-training

biostat-578

A repository for all of my teaching material

blogging-my-genome

DNAnexus platform applets for analyzing my genome, and associated notes

clinvar

Parsing ClinVar data

compgenr

dat3

General Assembly's Data Science course in Washington, DC

datasciencecoursera

datasharing

The Leek group guide to data sharing

ddocent

a bash pipeline for ddRAD sequencing

deviumweb

Interactive multivariate data analysis in R implemented in shiny.

elements-of-python-style

Goes beyond PEP8 to discuss what makes Python code feel great. A Strunk & White for Python.

freebayes

Bayesian haplotype-based polymorphism discovery and genotyping.

general

general code

getting-started-bigquery

Examples of how to get started with genomics data in BigQuery in many languages.

gms

The Genome Modeling System installer (BETA).

hgvs

HGVS variant name parsing and generation

identification_of_novel_transcripts

Integrating RNA-Seq tools to identify Novel transcripts

jvarkit

Java utilities for Bioinformatics

me114

ME114 Introduction to Data Science and Big Data Analytics 2015

ml_for_hackers

Code accompanying the book "Machine Learning for Hackers"

ngs_reads_simulator

NGS Reads Simulator generates sequencing reads and also introduces base calling error.

ngsplot

Quick mining and visualization of NGS data by integrating genomic databases