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HaploKit's Projects

crosshylight icon crosshylight

CrossHyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NGS and 3rd generation sequencing to rapidly and accurately assemble highly complex metagenomic sequencing data.

diseasecapsule icon diseasecapsule

Predicting the prevalence of complex genetic diseases from individual genotype profiles using capsule networks

hero icon hero

Hybrid error correction approach for long reads using overlap graph

hylight icon hylight

HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NGS and 3rd generation sequencing to rapidly and accurately assemble highly complex metagenomic sequencing data.

phasebook icon phasebook

Haplotype aware de novo assembly of diploid genome from long reads

strainline icon strainline

Full-length de novo viral haplotype reconstruction from noisy long reads

strainxpress icon strainxpress

StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high complexity metagenome sequencing data at strain resolution.

vechat icon vechat

Correcting errors in noisy long reads using variation graphs

whatshap icon whatshap

Read-based phasing of genomic variants, also called haplotype assembly

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