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3dmol.js

WebGL accelerated JavaScript molecular graphics library

agfusion

Python package to annotate and visualize gene fusions.

akt

Ancestry and Kinship Tools

alfred-workflows

:metal: A collection of Alfred 3 workflows that will rock your world

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2018

arangodb

🥑 ArangoDB is a native multi-model database with flexible data models for documents, graphs, and key-values. Build high performance applications using a convenient SQL-like query language or JavaScript extensions.

artemis

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

atlas-cnv

Method to detect exonic CNVs in NGS Gene Targeted Panels

autoencoder_for_cancer

autoencoder to compress methylation data and cancer cell classifier

autojump

A cd command that learns - easily navigate directories from the command line

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-cancer-variant-databases

A community-maintained repository of cancer clinical knowledge bases and databases focused on cancer variants.

awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

awesome-django

Repository mirror of GitLab: https://gitlab.com/rosarior/awesome-django

bamsurgeon

tools for adding mutations to existing .bam files, used for testing mutation callers在一个bam文件上模拟突变，用于pipeline的性能验证

battenberg

Battenberg R package for subclonal copynumber estimation

bernoulli-mixture-model

Implementation of Bernoulli Mixture Models in Python

bic-variants_pipeline

BIC@MSKCC Variants Pipeline，MSKCC医院的肿瘤pipeline

bio-playground

miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.

bioinformatic_notes

some useful bioinformatics scripts & notes during my work

biopieces

Biopieces is a bioinformatic framework of tools easily used and easily created.

bmftools

Barcoded Molecular Families

bmsisea

Detection of micro-satellite instability from circulating tumor DNA by targeted deep sequencing，燃石bMSI检测

bootstrap

The most popular HTML, CSS, and JavaScript framework for developing responsive, mobile first projects on the web.

cancerlocator

A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.

cancerseekv1

R code for the algorithm used in Cohen et al. Science 2018 "Detection and localization of surgically resectable cancers with a multi-analyte blood test", Science 2018, 359(6378):926-930.CancerSEEKv1中计算Omega score的脚本

cancertiming

caveman

SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer samples. Supports both bam and cram format via htslib

cbioportal

cBioPortal for Cancer Genomics

cellassign

Automated, probabilistic assignment of cell types in scRNA-seq data，判断单细胞转录组测序结果和数据库中的哪些类型一样。