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a-pytorch-tutorial-to-object-detection

SSD: Single Shot MultiBox Detector | a PyTorch Tutorial to Object Detection

basic

A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images

bioimage.io

Website for the BioImage Model zoo -- a model zoo for bioimage analysis.

camacq_ui

cell-pro-template

This repository serves only as a Python template for new projects

cellpose

a generalist algorithm for cellular segmentation

cellpose_applications

covid-application

This is to build some application for covid19ai.io

covid-models

covid-portal

Portal for Swedish datasets related to covid-19

covid19ai

covid19ai-models

cs231n.github.io

Public facing notes page

cytokit

Microscopy Image Cytometry Toolkit

detectron

FAIR's research platform for object detection research, implementing popular algorithms like Mask R-CNN and RetinaNet.

detectron2

Detectron2 is FAIR's next-generation platform for object detection and segmentation.

featureextraction

This code extracts SLF quantitative image features for fluorescent microscopy images. This code was a collaboration between Murphy lab (murphylab.web.cmu.edu) and the HPA Cell Atlas (proteinatlas.org/humancell). Explanations for SLF features can be found here (murphylab.web.cmu.edu/services/SLF/features.html).

flowcytometrytools

A python package for visualization and analysis of high-throughput flow cytometry data

flowdec

TensorFlow Deconvolution for Microscopy Data

imjoy-cloud-annotation

Client for connecting to the ImJoy AI Engine for collaborative annotation in the cloud.

imjoy-core

Core library for ImJoy.

imjoy-plugin-config

This is for hosting config files for imjoy plugins

imjoy-starter

kaibu

Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.

machine_learning_recipes

:space_invader: Code developed in video series "Machine Learning Recipes", eventually with some personal comments and annotations.

microscopeimagequality

pretools

This is a repo that test small tools prior to use

python-image-tutorial

Python image tutorial (based on ipython notebooks)

pytorch-cyclegan-and-pix2pix

Image-to-image translation in PyTorch (e.g., horse2zebra, edges2cats, and more)

pytorch-unet

PyTorch implementation of the U-Net for image semantic segmentation with high quality images