Comments (4)
kasperdanielhansen
commented on August 28, 2024
This is a bug. I need to spend some time to be sure to locate the exact place and what the different functions promises, but guess that it will be fixed by making sure that getProbeInfo(object) only returns probe addresses which are present in object. This may be because SNP probes are treated differently upstream.
This is because we only recently added the possibility of an RGChannelSet not containing all probes from the manifest. Most functions work, but I clearly didn't test this one. Thanks.
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kasperdanielhansen
commented on August 28, 2024
Fixed in minfi 1.21.5.
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simonwang1012
commented on August 28, 2024
I got an error after combing 450K and EPIC RGset as follows,
> mySampleSet <- fromRGChannelSet(RGsetEx_combined)
Error in minfi::getRed(myRGChannelSet)[controlTable$Address, ] :
subscript out of bounds
How should I deal with this please.
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wac
commented on August 28, 2024
This was resolved for me by the new version of minfi. Note that you might
need to update your version of R to be able to install a recent version of
minfi!
--Warren
On Tue, 6 Feb 2018 at 06:53 simonwang1012 ***@***.***> wrote:
I got an error after combing 450K and EPIC RGset as follows,
> mySampleSet <- fromRGChannelSet(RGsetEx_combined)
Error in minfi::getRed(myRGChannelSet)[controlTable$Address, ] :
subscript out of bounds
How should I deal with this please.
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--Warren A. Cheung
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Center for Pediatric Genomic Medicine, Children's Mercy Hospital
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