error writing all requested bytes to file about speedseq HOT 2 CLOSED

hmm, that's interesting. Can you tell me more about your samples and the data you're processing?

• species
• ref genome
• WGS? (depth?)
• number of threads you were running?

I have not seen this error before. I wonder if it's related to our parallelization of CNVnator not agreeing with your filesystem.

from speedseq.

It looks like it has to do with root, one of the libraries that CNVnator is
built on. It appears as if you may have run out of room when writing to
the root file.

See: https://root.cern.ch/phpBB3/viewtopic.php?f=3&t=19427&view=unread

On Wed, Apr 8, 2015 at 8:19 AM, Colby Chiang [email protected]
wrote:

hmm, that's interesting. Can you tell me more about your samples and the
data you're processing?

• species
• ref genome
• WGS? (depth?)
• number of threads you were running?

I have not seen this error before. I wonder if it's related to our
parallelization of CNVnator not agreeing with your filesystem.

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#23 (comment).

Ryan Layer

from speedseq.