hakon-jon Goto Github PK

bash-tap

A basic bash port of a Test::More/Test::Builder-style TAP-compliant test library.

complete-striped-smith-waterman-library

cpp_progress_bar

C++ function that implements a progress bar in console applications

dynamic

Dynamic succinct/compressed data structures

fastahack

utilities for indexing and sequence extraction from FASTA files

fermi-lite

Standalone C library for assembling Illumina short reads in small regions

filevercmp

filevercmp function as in sort --version-sort

freec

Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data

fsom

A tiny C library for managing SOM (Self-Organizing Maps) neural networks

gbwt

Substring index for paths in a graph

gfakluge

A C++ library and utilities for manipulating the Graphical Fragment Assembly format.

googletest

Google Test

gperftools

Main gperftools repository

gssw

efficient alignment of strings to partially ordered string graphs

htslib

C library for high-throughput sequencing data formats

intervaltree

a minimal C++ interval tree implementation

jellyfish

A fast multi-threaded k-mer counter

lancet

Microassembly based somatic variant caller for NGS data

libdivsufsort

A lightweight suffix-sorting library

libvcfh

A small library for generating VCF headers

lichee

Multi-sample cancer phylogeny reconstruction

lru_cache

A thread-safe LRU cache implementation in C++

manta

Structural variant and indel caller for mapped sequencing data

multichoose

generate multiset combinations (n multichoose k)

pinchesandcacti

Library for constructing pinch graphs and cactus graphs

protobuf

Protocol Buffers - Google's data interchange format

pygps

pyGPs is a library containing an object-oriented python implementation for Gaussian Process (GP) regression and classification.

raptor

Redland Raptor RDF syntax library

rocksdb

A library that provides an embeddable, persistent key-value store for fast storage.

rufus

RUFUS k-mer based genomic variant detection