haesemeyer Goto Github PK

2panalyzer

Plugin based program for the annotation and analysis of 4D calcium imaging data.

camandstim

Simple program to combine (laser) stimulation with image recording

gradientprediction

Code for "Convergent Temperature Representations in Artificial and Biological Neural Networks"

haesemeyer.github.io

Martin Haesemeyer's site

imaging_pipeline

imaginganalysis

Analysis code for Haesemeyer et al., Neuron, 2018

mhapi

Utility classes for larval zebrafish behavior and imaging experiments

mine_pub

Code for "Model identification of neural encoding (MINE)" publication

multitracker

Code for tracker used in Randlett Et al., Current Biology, 2019

nimfa

Nimfa - A Python module for nonnegative matrix factorization

patchcommander

powerlaw_analysis

pynrrd

Simple pure-python module for reading and writing nrrd files.

pyplotinterface

Interface from C# program to a python process in order to make the occasional plot via matplotlib.

regionselector

Simple python qt5 gui for selecting brain regions in stacks and saving their descriptors to file

zebratrack

Simple program to run experiments while tracking larval zebrafish