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Aurélien Guy-Duché's Projects

blast2bam icon blast2bam

Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.

bwa_test icon bwa_test

This repo is used to test an issue with BWA

chiron icon chiron

A basecaller for Oxford Nanopore Technologies' sequencers

fastq2fasta icon fastq2fasta

Fastq2fasta converts single or paired end fastQ(s) in a single fasta file for Blastn input.

master_thesis icon master_thesis

This repo contains LaTeX and pdf versions of my bioinformatics master thesis.

ntcontent icon ntcontent

NTContent is a sliding window based tool used to assess the evolution of the percentage of specific nucleotides along a DNA/RNA sequence.

scrappie icon scrappie

Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group

sloika icon sloika

Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling

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