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bio-db-vcf

Ruby parser for Variant Call Format (VCF)

bio-kseq

Ruby inferface for kseq.h by Heng Li for fast FASTA/Q reading

bio-snpeff

A tool to parse snpEff annotations in Ruby

bioconda-recipes

Conda recipes for the bioconda channel.

biojob

bioruby-samtools

Porting of samtools-ruby to BioRuby. Binder of samtools for ruby, on the top of FFI -from original project-

bioruby-vcf

Smart VCF parser

bpp-seq-omics

Bio++ Sequence Omics Library

bwa

Burrow-Wheeler Aligner

cellbrowser

Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org

chippeakanno

dotfiles

Dotfiles

e-dbus-api

DBUS API for Enlightenment

fastqc

A FastQC version with option to run on a bunch of files and generate a single report

fzf.kak

FZF for Kakoune

genecache

Very simple GENE ID conversion tool with a local SQLite3 DB for caching

gmap-gsnap

*UNOFFICIAL, UNMAINTAINED and OUTDATED*: This was an unofficial archive of GMAP-GSNAP releases. Please use the original website for current versions of the source code.

gusevfe_utils

My ruby gem

homebrew-science

Scientific formulae for the Homebrew package manager

index_tools

A set of utils to work with FASTQ files with index information in definition line.

librelist

The code for the librelist.com free email service.

linuxbrew

Experimental fork of Homebrew for Linux.

nf-orthofinder

pandoc-numbering

A pandoc filter for numbering all kinds of things.

primercut

Tool for removing primer sequences from aligned data

restish

Restish is a CLI for interacting with REST-ish HTTP APIs with some nice features built-in

ruby-mathgl

Ruby wrapper for MathGL - library for scientific data visualization

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

rust-htslib

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

seqan

SeqAn's official repository.