Comments (1)
zkamvar
commented on June 26, 2024
I have found the problem. poppr:::fill_zero() assumes that the incoming data is numeric. This procedure was bypassed in the fix for #108 by assuming that all SNP data was haploid.
The solution I'm going with is to modify the mat = FALSE flag of fill_zero -> fill_zero_locus -> generate_bruvo_mat that will accept non-numeric data. I am changing it to mat_type = character(0) by default and accepting one of three scenarios:
character(0): should produce a data frame with one locus per column"numeric": produces a numeric matrix with one allele per column"character": produces a character matrix with one allele per column.
from poppr.
Related Issues (20)
- Fix inefficient implementation of boot.bruvo HOT 3
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