Related Issues (20)
- Annotation VCF HOT 1
- Enhancement: Adding allele counts per strand in vcf-readcount-annotator HOT 1
- warn when pick flag is expected but not observed
- Add feature to vcf-genotype-annotator to allow for adding GT field to existing samples
- Bug in "vcf-genotype-annotator" due to misspelling HOT 1
- vcf-readcount-annotator only annotates first variant for indel HOT 1
- getting error when The INFO field name to use HOT 4
- When running the vcf-info-annotator support input TSVs with multiple value columns
- AttributeError: 'bool' object has no attribute 'split' HOT 2
- vep_annotation_reporter.py + AttributeError: 'bool' object has no attribute 'split' HOT 3
- ref_transcript_mismatch_reporter: `ValueError: invalid literal for int() with base 10: '71/98'`
- VAtools vcf-expression-annotator does not add gene expression for genes without annotated gene names HOT 2
- small special bug about logging
- Installation via pip requires version previous than 21 because of Python version HOT 2
- vcf-readcount-annotator HOT 3
- VEP entry for at CHR chr*, POS *, REF *, ALT * already exists HOT 2
- ValueError: invalid literal for int() with base 10 HOT 1
- Support for GZ compressed annotation files
- Please consider adding support for multi-thread support HOT 3
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