Comments (3)
As preparation for this Hackathon a datamodel [1] to capture CIViC data in Wikidata has been implemented. An initial batch of 25 CIViC records have been captured in Wikidata. During the hackathon we would like to:
- Review the current datamodel and discuss posisble extentions.
- Import CIViC data completely into Wikidata.
- Explore CIViC data in Wikidata and experiment with querying that data with other domains captured in Wikdiata.
- Consider other relevant resources to be included
- Draft an update cycle between CIViC and Wikidata
[1] https://docs.google.com/document/d/1wWvbKnI0Ky0Okz3pIk0Lfxs4c2roIeH_T9W6WJQyxik/edit
from civic-meeting.
For the SWAT4LS hackathon, where other semantic web resources will be integrated with CIViC data, we need mappings between the CIViC Wikidata model and external ontologies. As an additional hackathon achievement I would like to propose to draft these mappings.
from civic-meeting.
This sounds like a great idea. +1
from civic-meeting.
Related Issues (20)
- Curation: Building a Fact-checking companion dataset for CIViC (Room 309) HOT 1
- Develop Template Components for CCGA in MediaWiki (Room 307) HOT 1
- Improve WHO book representation in ontologies (Room 307) HOT 3
- Discuss current and novel visual representations of structural rearrangements and copy number data (Room 307) HOT 2
- Biophysical modeling for interpreting functional impacts HOT 4
- Curating the non-coding genome HOT 2
- Gene fusion curation (Room 308) HOT 12
- Identifying current variants that are complex molecular profiles (Room 305) HOT 3
- Assist data clients in updating their codebase to use the V2 API (Room 305) HOT 1
- Draft SOP for the new molecular profile feature (Room 305) HOT 1
- Parameterizing a Digital Twin Model HOT 8
- Improve completeness of level A evidence items (Room 309) HOT 1
- CIVIC Molecular Profiles Integration with OpenCRAVAT HOT 12
- Clinical interpretation of non coding variants HOT 1
- Applying the ClinGen/CGC/VICC oncogenicity guidelines within a clinical workflow HOT 2
- Categorical Variation
- Expanding the CIViC Data Model to non-Gene based Variants HOT 7
- Return of interpretation results HOT 6
- How to use high throughput functional assay data for variant interpretation HOT 5
- Increasing the Transparency of Variant Effect Prediction HOT 4
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from civic-meeting.