Comments (4)
Hi Cheng, can you provide details on your CPU? Are you using an M1/M2 chip? We've had trouble with these apple chips + conda in the past.
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Dear Professor Gregory Way,
Thank you for your patient answer! Here are the details of my CPU:
The first time I defaulted to the pip of python 2.7, when I used the pip of python 3.9 by default, there seemed to be no such problem.
But in the end, I haven't been able to install it successfully. I got the following feedback, maybe my device needs to be updated. I will try to update it first. I will consult with you later, thank you!
Best,
Cheng
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Dear Professor Gregory Way,
I'm still very interested in your biobombe, I think it's a great job.
However, when I manually configure the environment, I find that the last three URLs are not available. Do you have a web address available there?
We would be very honored to have your help, thank you!
Best,
Cheng
from biobombe.
I think hetio moved to:
https://github.com/hetio/hetnetpy
and hetmech moved to: https://github.com/greenelab/connectivity-search-analyses
Are you also having trouble accessing the tybalt repo if you replace those two URLs with the new locations?
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Related Issues (20)
- Rename Module 6 to `6.biobombe-projection`
- Update panels in coverage figure
- Additional Analysis: Applications to External Datasets HOT 1
- Plot Change in AUC HOT 1
- Missing x axis label in main coverage figure
- Move E and F of GTEx Figure to Supplement
- Add Ensemble Analysis to TCGA FIgure
- Also, see what happens for all feature predictions on TCGA cancer type and mutation
- Find Sex Feature in TCGA HOT 1
- Validate MYCN status in NBL Cell Lines HOT 1
- Generate Supplementary Figure Describing GTEx and TCGA Sex Features HOT 2
- Change y axis label for Feature Rank Plot HOT 1
- Split GTEx Figure G and H into New Supplementary Figure
- Update TCGA Ensemble Model Coefficient Figure (panel h)
- Add t-test for NBL Cell lines in MYCN amplification signature application
- Add Vince as an Author
- Rerun Signature Module with All TARGET samples
- Update Citation to Genome Biology
- where is model?
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