Comments (1)
This seems to be related to the long standing bug where GffCompare used to discard "duplicate" transcripts even in "annotation mode". This should be now fixed in release v0.10.2.
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Related Issues (20)
- Availability of new version on Conda and biocontainers
- gff file and the XLOC numbers are not ordered correctly
- Extract transposon HOT 1
- Missing tmap and refmap files in query gff directory + missing statistics in stats file
- How to keep the CDS info for each transcript? HOT 2
- Transcript classification codes ? HOT 1
- class_code 'u' in all transcripts HOT 1
- Merging different gtf files
- How is class code X is identified in stranded data?
- There is no CDS information in the generated file๏ผ
- add option to assemble transfrags in the combined.gtf output HOT 1
- A question on gffcompare
- -p should rename transcripts even when running in "annotation mode" (single input file, no merge options)
- all input transcript attributes and features should be preserved in annotation mode
- No sensitivity or precision stats reported if multiple gffs given as input
- Number of loci and mRNAs in reference keeps changing HOT 1
- GFFCompare ".tracking" file not containing all transcript IDs of all the provided annotation files
- "Warning: merging adjacent/overlapping segments" when using GFFCompare
- How can one visualize GFF files coverage, FPKM ; TPM values in a genome browser?
- missing stringTie ID in gffcomapre tmap file
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