Comments (2)
Does the chromosome naming convention match with the reference ? Because if not, that would be the best way to miss everything, like it seems to be the case here.
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Related Issues (20)
- Extract transposon HOT 1
- Missing tmap and refmap files in query gff directory + missing statistics in stats file
- How to keep the CDS info for each transcript? HOT 2
- Transcript classification codes ? HOT 1
- class_code 'u' in all transcripts HOT 1
- Merging different gtf files
- How is class code X is identified in stranded data?
- There is no CDS information in the generated file๏ผ
- add option to assemble transfrags in the combined.gtf output HOT 1
- A question on gffcompare
- -p should rename transcripts even when running in "annotation mode" (single input file, no merge options)
- all input transcript attributes and features should be preserved in annotation mode
- No sensitivity or precision stats reported if multiple gffs given as input
- Number of loci and mRNAs in reference keeps changing HOT 1
- GFFCompare ".tracking" file not containing all transcript IDs of all the provided annotation files
- "Warning: merging adjacent/overlapping segments" when using GFFCompare
- How can one visualize GFF files coverage, FPKM ; TPM values in a genome browser?
- missing stringTie ID in gffcomapre tmap file
- Should I filter the transcript with class code "s"?
- No Sensitivity/Accuracy in the .stats output file
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