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3d-cnn-pytorch

PyTorch implementation for 3D CNN models for medical image data (1 channel gray scale images).

3d-deformable-convolutions

A repository with a basic layer of 3D deformable receptive field for 3D VoxCNN and 3D VoxResNet

bapm

source code for brain anatomy prior modeling framework

bar

source code for brain anatomy-guided representation (BAR) learning framework

cold-diffusion-models

Official implementation of Cold-Diffusion for different transformations in pytorch.

cuda-nlml-mri-denoising

This project consists of the first successful GPU acceleration of an important MRI denoising alogorithm called Non Local Maximum Likelihood estimation

ddm2

Official repository of DDM2: Self-Supervised Diffusion MRI Denoising with Generative Diffusion Models, ICLR2023

ddpm-mri

Denoising Diffusion Probabilistic Models for denoising MRI images

deep-image-prior

Image restoration with neural networks but without learning.

denoise

Algorithms for brain MRI denoising

denoising-diffusion-pytorch

Implementation of Denoising Diffusion Probabilistic Model in Pytorch

diffpir

"Denoising Diffusion Models for Plug-and-Play Image Restoration", Yuanzhi Zhu, Kai Zhang, Jingyun Liang, Jiezhang Cao, Bihan Wen, Radu Timofte, Luc Van Gool.

dpir

Plug-and-Play Image Restoration with Deep Denoiser Prior (IEEE TPAMI 2021) (PyTorch)

fastsurfer

PyTorch implementation of FastSurferCNN

fondue

Denoising of anatomical MR Images using Deep Convolutional Neural Networks

fsqc

A set of quality control scripts for FreeSurfer- and FastSurfer-processed structural MRI data

hydranet

A Neural Network architecture for MRI Denoising

idpcnn

IDPCNN: Iterative denoising and projecting CNN for MRI reconstruction

image-denoising-using-deep-learning

jdac

Iterative Learning for Joint Image Denoising and Motion Artifact Correction of 3D Brain MRI

kair

Image Restoration Toolbox (PyTorch). Training and testing codes for DPIR, USRNet, DnCNN, FFDNet, SRMD, DPSR, BSRGAN, SwinIR

lldprogression

medicaldiffusion

Medical Diffusion: This repository contains the code to our paper Medical Diffusion: Denoising Diffusion Probabilistic Models for 3D Medical Image Synthesis

mri-motion-artifact-correction-self-assisted-priors

mri-motion-artifact-simulation

Python framework for simulation of motion artifacts in MR images

mri-motion-artifact-simulation-tool

mriqc

Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain

pnp-admm

Image Deconvolution with Plug-and-Play ADMM using an X-Dense-U-Net denoiser

pnp_admm_cnc_mri

Plug-and-Play ADMM for MRI Reconstruction with Convex Nonconvex Sparse regularization

segtransvae