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amazon-ebs-autoscale

Don't run out of disk space on your EC2 instance when generating or working with large files. Automatically add EBS volumes to a filesystem mount point in response to disk utilization.

argon-dashboard-flask

Argon Dashboard - Flask Template | Creative-Tim

aws-batch-genomics

Software sets up and runs an genome sequencing analysis workflow using AWS Batch and AWS Step Functions.

aws-genomics-workflows

Genomics Workflows on AWS

cgl-docker-lib

chatbot-frontend

A simple chatbot frontend made using bootstrap and jquery

chromviewer

Simple Java-based chromatogram viewer

cnv-p

a novel and post–processing approach for CNV filtering

cohort-matcher

Cohort-matcher

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

cwl-graph-generate

Generates https://view.commonwl.org/ like workflows images, showing a complete workflow.

datasciencecoursera

datasharing

The Leek group guide to data sharing

deep-learning-for-genomics-

docker-chromium-xvfb

Docker image for running browser tests against headless Chromium

engineer-manager

A list of engineering manager resource links.

ethseq

Ethnicity Annotation from Whole Exome Sequencing Data

fargate-ecscluster-cloudformation

fastqc

FastQC from http://www.bioinformatics.babraham.ac.uk/projects/fastqc/

fastqvalidator

Validate FastQ Files

fingerprint_maps

Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of functional genomic data.

flask-boto3

Flask extension that ties boto3 connectors to the application context

funnel

Funnel is a toolkit for distributed task execution via a simple, standard API.

genomics

Scripts, utilities and programs for genomic bioinformatics.

kcov

Code coverage tool for compiled programs, Python and Bash which uses debugging information to collect and report data without special compilation options

labs

Rmd source files for the HarvardX series PH525x

material-dashboard-flask

Material Dashboard - Flask Template | Creative-Tim

ngs360-flaskapp

paml

python-package-template

A template repo for Python packages