Comments (2)
I am getting random segmentation faults on our linux machine, too. Red Hat Linux with Kernel 3.10.0-327.18.2.el7.x86_64 and perl v5.16.3 .
I will upload my code into our git repository in the next days.
I am using a lot of different kmers with the MerDNA-function. Interestingly the segmentation fault is deterministic to the used perl code. It is always crashing for the same kmer. But if I change my code (just creating a new variable is enough), it will crash at another kmer. Seems to be an issue with pointers.
For me it is not the $mer->canonicalize-function causing this, it is the creation of the mer-object.
Cheers
Chris
ps. If it is necessary to debug the code in detail, just give me the instructions.
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This Perl binding bugs has been reported a couple of times now, on both Mac and Linux system. I am looking into it.
from jellyfish.
Related Issues (20)
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