OSError: Unknown template 'isyntax2raw.resources.ome_template' about isyntax2raw HOT 3 CLOSED

isyntax2raw write_tiles /home/dilip/pathology/isyntax/abcd.isyntax /home/dilip/pathology/tile_image
It throw the error
...
raise IOError('Unknown template %r' % name)
OSError: Unknown template 'isyntax2raw.resources.ome_template'

We have seen this before with isyntax2raw installations from an egg, but it should have been fixed with #9. Can you provide the exact steps (including specific commands) that you used to download and install isyntax2raw?

When it successfully convert the image into tile then i apply the following command to convert tiles into OME-TIFF format

bin/raw2ometiff-master /home/dilip/pathology/tile_image /home/dilip/pyramid.ome.tiff

then it again throw the error

2020-04-01 20:21:27,944 [main] INFO org.perf4j.TimingLogger - start[1585752687893] time[49] tag[initialize]
Exception in thread "main" picocli.CommandLine$ExecutionException: Error while calling command (com.glencoesoftware.pyramid.PyramidFromDirectoryWriter@46238e3f): java.lang.RuntimeException: loci.formats.FormatException: Could not create an N5 reader

This usually means that the tiles were not written. Does the output of the ls -hl /home/dilip/pathology/tile_image/ command show that there is a pyramid.n5 directory? If not, the tiles were not written and raw2ometiff should not be run.

from isyntax2raw.

Can you provide the exact steps (including specific commands) that you used to download and install isyntax2raw?

First I download the isyntax2raw.
After that unzip the zip file then i apply following command to install isyntax2raw

$ cd isyntax2raw-master
$ sudo python3 setup.py build
$ sudo python3 setup.py install

from isyntax2raw.

If you are having problems building from source, in particular with the XML templates, please install the prebuilt wheels from the releases:

• https://github.com/glencoesoftware/isyntax2raw/releases

from isyntax2raw.