Comments (4)
ctroupin
commented on September 26, 2024
Solution:
using Pkg
Pkg.update()(just reporting the issue for the record, in case others get it)
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ctroupin
commented on September 26, 2024
It now works in the notebook 90 but still had an issue in another application, using the same domain configuration but different data.
Replacing lonr by collect(lonr) etc. solves the issue, but why?
@time dbinfo = diva3d((collect(lonr), collect(latr), collect(depthr), TS),
(obslon, obslat, obsdepth, obstime), obsval,
len, eps2,
outputfile, varname,
bathname=bathname,
mask = mask,
fitcorrlen = false,
niter_e = 2,
ncvarattrib = ncvarattrib,
ncglobalattrib = ncglobalattrib,
surfextend = true
);Package versions
julia> Pkg.status()
Status `~/.julia/environments/v1.7/Project.toml`
[336ed68f] CSV v0.10.4
[052768ef] CUDA v3.12.0
[8be319e6] Chain v0.5.0
[8f4d0f93] Conda v1.7.0
[0d879ee6] DINCAE v2.0.1
[f57bf84d] DINCAE_utils v0.1.0 `https://github.com/gher-ulg/DINCAE_utils.jl#main`
[efc8151c] DIVAnd v2.7.8 `~/ULiege/Tools/DIVAnd.jl`
[1b7aed40] DIVAndNN v0.1.0 `https://github.com/gher-ulg/DIVAndNN.jl#master`
[7f46824f] DIVAnd_HFRadar v0.1.0 `https://github.com/gher-ulg/DIVAnd_HFRadar.jl#master`
[864edb3b] DataStructures v0.18.13
[b4f34e82] Distances v0.10.7
[31c24e10] Distributions v0.25.66
[2fb1d81b] GeoArrays v0.7.8
[855c05df] GeoMapping v0.0.0 `[email protected]:Alexander-Barth/GeoMapping.jl.git#master`
[0ef565a4] Geodesy v1.1.0
[c27321d9] Glob v1.3.0
[cd3eb016] HTTP v0.9.17
[7073ff75] IJulia v1.23.3
[a98d9a8b] Interpolations v0.13.6
[682c06a0] JSON v0.21.3
[1902f260] Knet v1.4.10
[23992714] MAT v0.10.3
[e1d29d7a] Missings v1.0.2
[0db19996] NBInclude v2.3.0
[85f8d34a] NCDatasets v0.12.6 `[email protected]:Alexander-Barth/NCDatasets.jl.git#master`
[b946abbf] NaNStatistics v0.6.14
[626c502c] Parquet v0.8.4
[3725be50] PhysOcean v0.6.5
[f3e62ec7] PkgCleanup v0.1.0 `https://github.com/giordano/PkgCleanup.jl#main`
[eebad327] PkgVersion v0.2.0
[c3e4b0f8] Pluto v0.19.9
[438e738f] PyCall v1.93.1
[d330b81b] PyPlot v2.10.0
[6f49c342] RCall v0.13.13
[295af30f] Revise v3.4.0
[276daf66] SpecialFunctions v2.1.7
[860ef19b] StableRNGs v1.0.0
[90137ffa] StaticArrays v1.5.2
[fd094767] Suppressor v0.2.1
[0a941bbe] Zarr v0.7.2
[7243133f] NetCDF_jll v400.802.103+0 `https://github.com/JuliaBinaryWrappers/NetCDF_jll.jl#main`
[10745b16] Statisticsfrom diva-workshops.
Alexander-Barth
commented on September 26, 2024
-
Within notebook 90 can you also run in a new cell
Pkg.status()and paste the output here? -
Can you check if you have in
notebook(or its parent directory) aManifest.tomlfile ?
(for context: You will probably see old version of NCDatasets. Starting the kernel IJulia is equivalent to julia --project=@..
Pkg.update() updates only your current environment (per default the global environment is used /home/USER/.julia/environments/vVERSION/).
Here is some explanation of @.:
https://stackoverflow.com/a/53624158/3801401
)
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ctroupin
commented on September 26, 2024
Sorry, I forgot to close that one.
I now works and I'm not sure why it was failing at some point.
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