Comments (2)
Same here. I could not run aldex.clr with a model.matrix object.
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This has been fixed in the ALDEx_bioc repository. Download and install the version in the dev branch and it should work.
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Related Issues (20)
- confusion regarding "mc.samples" argument HOT 1
- could not find function "aldex.plot" HOT 1
- Several options are giving errors HOT 8
- Feature Request: Specify a "reference" condition HOT 7
- Does Aldex2 supports confounding covariate adjustment?
- ALDEx2 clr transformation HOT 1
- Aldex2 aldex.glm results HOT 1
- Feature request: enable modeling random effects HOT 1
- Error running aldex.ttest
- Problem in calculating the differential OTU abundance based on glm model ALDEx2 version 1.20.0
- Can't use aldex.effect() on aldex.kw() object HOT 2
- Generalized Linear model type and Random effect HOT 1
- updates to aldex.glm and results interpretation HOT 2
- plotting of aldex2 (& picrust2) results?
- Cannot install on CentOS 8.6 HOT 3
- code for obtaining all pairwise comparisons under glm module HOT 3
- Error in data.t[grp1, ] - data.t[grp2, ] : non-conformable arrays HOT 2
- Installation issue HOT 2
- how to calculate the fold-change in ALDEx2? HOT 1
- Paired analysis by variable, not order HOT 1
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