getzlab Goto Github PK
Type: Organization
Type: Organization
ABSOLUTE source code that works with allelic copy ratio on both hg19 and hg38
Add readgroups based on Illumina IDs to given BAM
A MATLAB script to aggregates multiple PoN token files into a final PoN binary
Review anything (purities, mutations, etc) within a jupyter notebook with plotly dash and jupyter widgets
Template Repo for generating new JupyterReviewer Suites
Parsing tool from ASCATNGS to alleliccapseg output to use with ABSOLUTE
AsymTools is a package for analyzing transcriptional and replicative mutational strand asymmetries in cancer sequencing datasets.
Code to reproduce methods & results from Boiarsky et. al., Nature Communications 2022
Explore integrated data on the patient level interactively in a Dash App, powered by JupyterReviewer
A modular, high-performance computing solution to run jobs using SLURM
Repo for tinkering with canine and submitting PRs
Cancer Analysis tools in Python
CLUMPS adapted to post-translational modifications.
Re-factored code for CLUMPS.
Compare, Visualize, and Simulate Copy Number Profiles
dalmatian is a collection of high-level companion functions for Firecloud and FISS.
DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.
Script to scan openFDA and cancer.gov
a workflow funcotate aggregated MAF from multiple pairs: aggregated MAF-> individual VCFs -> left-align all indels -> funcotate each samples and merge
A dashboard for accessing GCP compute instances across different projects
Getz Lab site
The repo contains codes (in matlab) to force call GISTIC2 driver events at sample level
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.