Comments (6)
gcushen
commented on June 7, 2024
Please state your versions of Academic Admin and Python as well as providing the full traceback, which should locate the specific cause of the error.
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aledeluca
commented on June 7, 2024
OK, first of all: I tried on a different, Windows machine and everything worked. So, good news.
Right now I can't access the other machine (a Mac) where I had trouble, so I can't give you precise answers (but I will be able tomorrow). Anyway, when I opened this issue I had just installed Python3 from Homebrew, and Academic Admin from there using
pip3 install -U academic
so this might already be enough for you to understand the versions involved. I will write the full traceback (sorry for not including it earlier) tomorrow. Thank you very much for your help, and for developing Academic.
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dkobashi
commented on June 7, 2024
I had the same problem on my Mac OS X a few days ago after I installed python 3 with homebrew.
Then I installed miniconda3 (mini version of Anaconda Python 3) on Mac and installed academic admin tool (with pip install -U academic. I did not find pip3, but miniconda3 uses python3 by default. So pip should be equivalent to pip3. Make sure python and pip are from anaconda/miniconda3 before executing it). Then the error is gone and I was able to create a publication list.
You may want to try that, too. It is easy to install and use miniconda (or anaconda) python.
So the problem may be something to do with python 3 by homebrew.
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aledeluca
commented on June 7, 2024
Sorry for the delay.
Python v. 3.7.2 from Homebrew. Academic Admin v. 0.2.6.
Full traceback:
Traceback (most recent call last):
File "/usr/local/bin/academic", line 11, in <module>
sys.exit(main())
File "/usr/local/lib/python3.7/site-packages/academic/cli.py", line 77, in main
import_bibtex(args.bibtex, pub_dir=args.publication_dir, featured=args.featured, overwrite=args.overwrite)
File "/usr/local/lib/python3.7/site-packages/academic/cli.py", line 92, in import_bibtex
bib_database = bibtexparser.load(bibtex_file, parser=parser)
File "/usr/local/lib/python3.7/site-packages/bibtexparser/__init__.py", line 71, in load
return parser.parse_file(bibtex_file)
File "/usr/local/lib/python3.7/site-packages/bibtexparser/bparser.py", line 165, in parse_file
return self.parse(file.read(), partial=partial)
File "/usr/local/lib/python3.7/site-packages/bibtexparser/bparser.py", line 147, in parse
self._expr.parseFile(bibtex_file_obj)
File "/usr/local/lib/python3.7/site-packages/bibtexparser/bibtexexpression.py", line 263, in parseFile
return self.main_expression.parseFile(file_obj, parseAll=True)
File "/usr/local/lib/python3.7/site-packages/pyparsing.py", line 2362, in parseFile
return self.parseString(file_contents, parseAll)
File "/usr/local/lib/python3.7/site-packages/pyparsing.py", line 1804, in parseString
loc, tokens = self._parse( instring, 0 )
File "/usr/local/lib/python3.7/site-packages/pyparsing.py", line 1548, in _parseNoCache
loc,tokens = self.parseImpl( instring, preloc, doActions )
File "/usr/local/lib/python3.7/site-packages/pyparsing.py", line 4361, in parseImpl
return super(ZeroOrMore, self).parseImpl(instring, loc, doActions)
File "/usr/local/lib/python3.7/site-packages/pyparsing.py", line 4291, in parseImpl
loc, tokens = self_expr_parse( instring, loc, doActions, callPreParse=False )
File "/usr/local/lib/python3.7/site-packages/pyparsing.py", line 1548, in _parseNoCache
loc,tokens = self.parseImpl( instring, preloc, doActions )
File "/usr/local/lib/python3.7/site-packages/pyparsing.py", line 3871, in parseImpl
ret = e._parse( instring, loc, doActions )
File "/usr/local/lib/python3.7/site-packages/pyparsing.py", line 1548, in _parseNoCache
loc,tokens = self.parseImpl( instring, preloc, doActions )
File "/usr/local/lib/python3.7/site-packages/pyparsing.py", line 3722, in parseImpl
loc, exprtokens = e._parse( instring, loc, doActions )
File "/usr/local/lib/python3.7/site-packages/pyparsing.py", line 1548, in _parseNoCache
loc,tokens = self.parseImpl( instring, preloc, doActions )
File "/usr/local/lib/python3.7/site-packages/pyparsing.py", line 3871, in parseImpl
ret = e._parse( instring, loc, doActions )
File "/usr/local/lib/python3.7/site-packages/pyparsing.py", line 1548, in _parseNoCache
loc,tokens = self.parseImpl( instring, preloc, doActions )
File "/usr/local/lib/python3.7/site-packages/pyparsing.py", line 3722, in parseImpl
loc, exprtokens = e._parse( instring, loc, doActions )
File "/usr/local/lib/python3.7/site-packages/pyparsing.py", line 1548, in _parseNoCache
loc,tokens = self.parseImpl( instring, preloc, doActions )
File "/usr/local/lib/python3.7/site-packages/pyparsing.py", line 3705, in parseImpl
loc, resultlist = self.exprs[0]._parse( instring, loc, doActions, callPreParse=False )
File "/usr/local/lib/python3.7/site-packages/pyparsing.py", line 1581, in _parseNoCache
tokens = fn( instring, tokensStart, retTokens )
File "/usr/local/lib/python3.7/site-packages/pyparsing.py", line 1203, in wrapper
ret = func(*args[limit[0]:])
File "/usr/local/lib/python3.7/site-packages/bibtexparser/bibtexexpression.py", line 68, in field_to_pair
strip_after_new_lines(f.get('Value')))
File "/usr/local/lib/python3.7/site-packages/bibtexparser/bibtexexpression.py", line 25, in strip_after_new_lines
return _strip_after_new_lines(s)
File "/usr/local/lib/python3.7/site-packages/bibtexparser/bibtexexpression.py", line 10, in _strip_after_new_lines
lines = s.splitlines()
TypeError: 'str' object is not callable
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gcushen
commented on June 7, 2024
Python 3.7 makes some major breaking changes to Python. Perhaps the dependency version of bibtexparser is incompatible with Python 3.7+...
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gcushen
commented on June 7, 2024
It was a bug upstream in Bibtexparser that has now been fixed: sciunto-org/python-bibtexparser#225 . Updating your Bibtexparser dependency or re-installing Academic Admin in a fresh environment should fix it.
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Related Issues (20)
- tags and categories for bibtex entry HOT 2
- The LaTeX code inside title would become invalid after `clean_bibtex_str` HOT 3
- Fails to create publication if other publication exists from the same year HOT 1
- Created tags are considered as single tag by Hugo HOT 2
- hugo-academic-cli bibtex import is broken with hugo v0.89.0 HOT 3
- Add support for JSON CSL (web friendly Bibtex equivalent)
- Error: No such file or directory: 'content/publication/.../index.md' HOT 4
- Publication parameter on Journal article HOT 1
- import fails without any output even with verbose param HOT 1
- Install Error
- Issues with folder names while importing bibtex entry HOT 5
- Add support for extra hugo fields to be setup by extra bibtex fields. HOT 1
- Could you please add a `[build-sysem]` section to `pyproject.toml`?
- Hugo Academic CLI v0.8.1 does nothing HOT 3
- text in italics is not transformed to _italics_ in index.md HOT 1
- Feature request: skip duplicated arvix publications HOT 1
- When importing thesis' metadata, if it could also import if it is a B.S., M.S., or Ph.D. Thesis HOT 2
- hugo command usage in bibtext import does not check cmd return HOT 5
- academic 0.7.0 failed to import asserts for wowchemy 5.3.0 HOT 1
- update_wowchemy fail HOT 1
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