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jorisvandenbossche avatar jorisvandenbossche commented on September 26, 2024 1

Turns out the processes were not picking up the correct proj version, something to do with my local installation, so closing.

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jorisvandenbossche avatar jorisvandenbossche commented on September 26, 2024

OK, reading https://stackoverflow.com/questions/46691675/what-do-killedworker-exceptions-mean-in-dask mentioned to look at the worker logs in stdout, which reminded me that when working in a notebook, you don't see those directly but only in the terminal where you started the notebook. And indeed, that gives a more understandable error:

distributed.protocol.core - CRITICAL - Failed to deserialize
Traceback (most recent call last):
  File "/home/joris/miniconda3/envs/geo-dev/lib/python3.8/site-packages/distributed/protocol/core.py", line 124, in loads
    value = _deserialize(head, fs, deserializers=deserializers)
  File "/home/joris/miniconda3/envs/geo-dev/lib/python3.8/site-packages/distributed/protocol/serialize.py", line 268, in deserialize
    return loads(header, frames)
  File "/home/joris/miniconda3/envs/geo-dev/lib/python3.8/site-packages/distributed/protocol/serialize.py", line 62, in pickle_loads
    return pickle.loads(b"".join(frames))
  File "/home/joris/miniconda3/envs/geo-dev/lib/python3.8/site-packages/distributed/protocol/pickle.py", line 59, in loads
    return pickle.loads(x)
  File "/home/joris/scipy/repos/pyproj/pyproj/crs/crs.py", line 295, in __init__
    super().__init__(projstring)
  File "pyproj/_crs.pyx", line 2332, in pyproj._crs._CRS.__init__
pyproj.exceptions.CRSError: Invalid projection: epsg:4326: (Internal Proj Error: proj_create: cannot build geodeticCRS 4326: SQLite error on SELECT name, ellipsoid_auth_name, ellipsoid_code, prime_meridian_auth_name, prime_meridian_code, area_of_use_auth_name, area_of_use_code, publication_date, deprecated FROM geodetic_datum WHERE auth_name = ? AND code = ?: no such column: publication_date)
distributed.core - ERROR - Invalid projection: epsg:4326: (Internal Proj Error: proj_create: cannot build geodeticCRS 4326: SQLite error on SELECT name, ellipsoid_auth_name, ellipsoid_code, prime_meridian_auth_name, prime_meridian_code, area_of_use_auth_name, area_of_use_code, publication_date, deprecated FROM geodetic_datum WHERE auth_name = ? AND code = ?: no such column: publication_date)

so something is wrong with my pyproj installation.

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