Comments (5)
bgsmase
commented on May 29, 2024
@nmtoken can get output from gdalinfo, but can't connect to the NetCDF file as a datasource. Has tried two different software packages. Mapserver first then GeoServer. GeoServer gives a warning that ' No CF-Standard File found'. Not yet investigated whether file can be converted into a CF version.
from project-support-wp8.
nmtoken
commented on May 29, 2024
As a first step will need CF convention metadata. Under investigation.
from project-support-wp8.
bgsmase
commented on May 29, 2024
Conversion to CF conformant NetCDF still under investigation
from project-support-wp8.
nmtoken
commented on May 29, 2024
We now have the data in NetCDF-CF and will try to configure a WCS to supply it
$ gdalinfo -mm Nstor_timefix1.nc
Driver: netCDF/Network Common Data Format
Files: Nstor_timefix1.nc
Nstor_timefix1.nc.aux.xml
Size is 718, 279
Origin = (-179.000000000000000,83.500000000000000)
Pixel Size = (0.500000000000000,-0.500000000000000)
Metadata:
lat#axis=Y
lat#long_name=lat
lat#standard_name=latitude
lat#units=degrees_north
lon#axis=X
lon#long_name=lon
lon#standard_name=longitude
lon#units=degrees_east
NC_GLOBAL#CDI=Climate Data Interface version 1.9.9 (https://mpimet.mpg.de/cdi)
NC_GLOBAL#CDO=Climate Data Operators version 1.9.9 (https://mpimet.mpg.de/cdo)
NC_GLOBAL#Conventions=CF-1.6
NC_GLOBAL#history=Tue Mar 09 11:23:07 2021: cdo settaxis,1899-01-01,00:00,1year Nstor.nc Nstor_timefix1.nc
Mon Mar 8 23:34:02 2021: ncatted -O -a units,time,o,c,years since 1899-1-1 0:0:0 Nstor.nc
Mon Mar 8 23:03:32 2021: ncatted -O -a units,time,o,c,years since 1899-01-01 00:00 Nstor.nc
M.J. Ascott, Thu Jun 14 09:45:32 2018
NC_GLOBAL#institution=British Geological Survey
NC_GLOBAL#NCO=netCDF Operators version 4.7.9 (Homepage = http://nco.sf.net, Code = http://github.com/nco/nco)
NC_GLOBAL#references=Ascott, M. J., Gooddy, D. C., Wang, L., Stuart, M. E., Lewis, M. A., Ward, R. S., & Binley, A. M. (2017). Global patterns of nitrate storage in the vadose zone. Nature Communications, 8(1), 1416.
NC_GLOBAL#title=Global modelled estimates of nitrate stored in the vadose zone
NETCDF_DIM_EXTRA={time}
NETCDF_DIM_time_DEF={101,6}
NETCDF_DIM_time_VALUES={0,1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,86,87,88,89,90,91,92,93,94,95,96,97,98,99,100}
Nstor#long_name=nitrate_storage_vadose_zone
Nstor#missing_value=1e+32
Nstor#units=kg N
Nstor#_FillValue=1e+32
time#axis=T
time#calendar=standard
time#long_name=time
time#standard_name=time
time#units=years since 1899-1-1 0:0:0
Corner Coordinates:
Upper Left (-179.0000000, 83.5000000)
Lower Left (-179.0000000, -56.0000000)
Upper Right ( 180.0000000, 83.5000000)
Lower Right ( 180.0000000, -56.0000000)
Center ( 0.5000000, 13.7500000)
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Min=0.000 Max=7201570.000 Computed Min/Max=0.000,7201570.000
Minimum=0.000, Maximum=7201570.000, Mean=315990.101, StdDev=491194.450
NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=0
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=7201570
STATISTICS_MEAN=315990.10141193
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=491194.45010364
units=kg N
_FillValue=1e+32
Band 2 Block=718x279 Type=Float64, ColorInterp=Undefined
Min=0.000 Max=14347030.000 Computed Min/Max=0.000,14347030.000
Minimum=0.000, Maximum=14347030.000, Mean=768988.893, StdDev=1062148.537
NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=1
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=14347030
STATISTICS_MEAN=768988.89254911
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=1062148.5370304
units=kg N
_FillValue=1e+32
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Minimum=0.000, Maximum=21532330.000, Mean=1018565.556, StdDev=1393549.274
NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=2
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=21532330
STATISTICS_MEAN=1018565.5561153
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=1393549.2742627
units=kg N
_FillValue=1e+32
Band 4 Block=718x279 Type=Float64, ColorInterp=Undefined
Min=0.000 Max=28725480.000 Computed Min/Max=0.000,28725480.000
Minimum=0.000, Maximum=28725480.000, Mean=1252430.615, StdDev=1744177.731
NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=3
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=28725480
STATISTICS_MEAN=1252430.6152637
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=1744177.7311533
units=kg N
_FillValue=1e+32
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Minimum=0.000, Maximum=35926488.000, Mean=1473364.964, StdDev=2096046.674
NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=4
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=35926488
STATISTICS_MEAN=1473364.9637826
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=2096046.6743622
units=kg N
_FillValue=1e+32
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Min=0.000 Max=43135352.000 Computed Min/Max=0.000,43135352.000
Minimum=0.000, Maximum=43135352.000, Mean=1681965.332, StdDev=2439807.517
NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=5
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=43135352
STATISTICS_MEAN=1681965.3321953
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=2439807.51706
units=kg N
_FillValue=1e+32
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Minimum=0.000, Maximum=50347072.000, Mean=1882727.650, StdDev=2780321.177
NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=6
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=50347072
STATISTICS_MEAN=1882727.6500721
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=2780321.1771292
units=kg N
_FillValue=1e+32
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Min=0.000 Max=57561648.000 Computed Min/Max=0.000,57561648.000
Minimum=0.000, Maximum=57561648.000, Mean=2076359.089, StdDev=3116034.259
NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=7
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=57561648
STATISTICS_MEAN=2076359.0890256
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=3116034.2594861
units=kg N
_FillValue=1e+32
Band 9 Block=718x279 Type=Float64, ColorInterp=Undefined
Min=0.000 Max=64779080.000 Computed Min/Max=0.000,64779080.000
Minimum=0.000, Maximum=64779080.000, Mean=2263479.507, StdDev=3445444.765
NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=8
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=64779080
STATISTICS_MEAN=2263479.5065336
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=3445444.7645948
units=kg N
_FillValue=1e+32
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Min=0.000 Max=71999368.000 Computed Min/Max=0.000,71999368.000
Minimum=0.000, Maximum=71999368.000, Mean=2445416.825, StdDev=3770843.569
NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=9
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=71999368
STATISTICS_MEAN=2445416.825305
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=3770843.5686097
units=kg N
_FillValue=1e+32
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Min=0.000 Max=79222512.000 Computed Min/Max=0.000,79222512.000
Minimum=0.000, Maximum=79222512.000, Mean=2622398.608, StdDev=4093087.456
NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=10
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=79222512
STATISTICS_MEAN=2622398.6081556
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=4093087.456441
units=kg N
_FillValue=1e+32
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Min=0.000 Max=86402928.000 Computed Min/Max=0.000,86402928.000
Minimum=0.000, Maximum=86402928.000, Mean=2790970.095, StdDev=4402692.312
NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=11
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=86402928
STATISTICS_MEAN=2790970.0952863
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=4402692.3119893
units=kg N
_FillValue=1e+32
Band 13 Block=718x279 Type=Float64, ColorInterp=Undefined
Min=0.000 Max=93540632.000 Computed Min/Max=0.000,93540632.000
Minimum=0.000, Maximum=93540632.000, Mean=2952254.217, StdDev=4700309.788
NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=12
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=93540632
STATISTICS_MEAN=2952254.2171111
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=4700309.788264
units=kg N
_FillValue=1e+32
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Min=0.000 Max=100635608.000 Computed Min/Max=0.000,100635608.000
Minimum=0.000, Maximum=100635608.000, Mean=3106708.637, StdDev=4986224.095
NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=13
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=100635608
STATISTICS_MEAN=3106708.6372151
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=4986224.094947
units=kg N
_FillValue=1e+32
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Minimum=0.000, Maximum=107687872.000, Mean=3255139.895, StdDev=5262100.984
NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=14
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=107687872
STATISTICS_MEAN=3255139.8953199
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=5262100.9837812
units=kg N
_FillValue=1e+32
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Min=0.000 Max=114697408.000 Computed Min/Max=0.000,114697408.000
Minimum=0.000, Maximum=114697408.000, Mean=3398249.529, StdDev=5530620.897
NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=15
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=114697408
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STATISTICS_STDDEV=5530620.8974863
units=kg N
_FillValue=1e+32
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NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=16
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=121746816
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STATISTICS_STDDEV=5801595.2576537
units=kg N
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NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=17
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=128836096
STATISTICS_MEAN=3681556.4797102
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STATISTICS_STDDEV=6073744.0100887
units=kg N
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NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=18
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=135965248
STATISTICS_MEAN=3821139.8195976
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=6346560.3975755
units=kg N
_FillValue=1e+32
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Minimum=0.000, Maximum=143134272.000, Mean=3959789.502, StdDev=6622150.653
NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=19
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=143134272
STATISTICS_MEAN=3959789.5020236
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=6622150.6527992
units=kg N
_FillValue=1e+32
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Minimum=0.000, Maximum=150343168.000, Mean=4096987.288, StdDev=6897895.050
NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=20
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=150343168
STATISTICS_MEAN=4096987.287977
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=6897895.0503921
units=kg N
_FillValue=1e+32
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Minimum=0.000, Maximum=157518032.000, Mean=4231786.860, StdDev=7171089.205
NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=21
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=157518032
STATISTICS_MEAN=4231786.8599362
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=7171089.2053293
units=kg N
_FillValue=1e+32
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Minimum=0.000, Maximum=164658880.000, Mean=4364090.336, StdDev=7441320.325
NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=22
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=164658880
STATISTICS_MEAN=4364090.335675
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=7441320.3251482
units=kg N
_FillValue=1e+32
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NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=23
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=171765712
STATISTICS_MEAN=4493752.2545466
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=7707512.7548984
units=kg N
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NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=24
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=178838528
STATISTICS_MEAN=4621252.0331862
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=7972325.7331269
units=kg N
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NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=25
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=185877312
STATISTICS_MEAN=4746555.8533937
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STATISTICS_STDDEV=8237079.1396718
units=kg N
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NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=26
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=192938464
STATISTICS_MEAN=4867611.8244991
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=8499500.2441604
units=kg N
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Minimum=0.000, Maximum=200022016.000, Mean=4985191.743, StdDev=8757314.179
NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=27
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=200022016
STATISTICS_MEAN=4985191.7426357
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=8757314.1792846
units=kg N
_FillValue=1e+32
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Minimum=0.000, Maximum=207127936.000, Mean=5099494.361, StdDev=9009700.174
NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=28
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=207127936
STATISTICS_MEAN=5099494.3610396
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=9009700.1744708
units=kg N
_FillValue=1e+32
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Minimum=0.000, Maximum=214256224.000, Mean=5210466.500, StdDev=9256188.706
NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=29
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=214256224
STATISTICS_MEAN=5210466.5002077
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=9256188.7059932
units=kg N
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_FillValue=1e+32
Band 101 Block=718x279 Type=Float64, ColorInterp=Undefined
Min=0.000 Max=1080506880.000 Computed Min/Max=0.000,1080506880.000
Minimum=0.000, Maximum=1080506880.000, Mean=24877357.640, StdDev=56821728.870
NoData Value=1.00000000000000005e+32
Unit Type: kg N
Metadata:
long_name=nitrate_storage_vadose_zone
missing_value=1e+32
NETCDF_DIM_time=100
NETCDF_VARNAME=Nstor
STATISTICS_MAXIMUM=1080506880
STATISTICS_MEAN=24877357.640029
STATISTICS_MINIMUM=0
STATISTICS_STDDEV=56821728.869681
units=kg N
_FillValue=1e+32
from project-support-wp8.
nmtoken
commented on May 29, 2024
Couldn't get GeoServer (Windows) or MapServer on Windows to recognise the file.
Preconfectioned Rasdaman (open source) doesn't come with netCDF support built in, so must compile your own version; tried guided build (on Ubuntu) but failed on building 'netCDF4._netCDF4' extension
MapServer on Linux can read the file, but doesn't serve it out again as the original NetCDF (serves each band as a sub-dataset). This is a restriction of GDAL (https://gdal.org/drivers/raster/netcdf.html#multiple-image-handling-subdatasets).
from project-support-wp8.
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