Comments (1)
Dear MichaelZH24,
If you want use Eoulsan to perform PE mapping, you need to set the input FASTQ files for your sample in the "Reads" column of your design file like: "[s1a.fq.bz2,s1b.fq.bz2]" instead of "s1a.fq.bz2" if you are in single end mode.
Eoulsan will automatically handle this files in PE mode for both, read filtering and mapping.
Regards,
Laurent.
from eoulsan.
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