genomicsplc Goto Github PK

ami-creator

Basic tool to create AMIs for EC2 based off of a kickstart config

ansible-style-guide

Style guide for writing Ansible

arvados

An open source platform for managing and analyzing biomedical big data

bats-core

Bash Automated Testing System

bcftools

This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

bindmapfuse

bioconda-recipes

Conda recipes for the bioconda channel.

cgat-core

Core functionality of the CGAT code

conda-recipes

build and test recipes for conda

dehydrated

letsencrypt/acme client implemented as a shell-script – just add water

docker-ci-dind

Docker-in-docker container to run Gitlab CI jobs (PUBLIC)

flare

The flare program performs local ancestry inference

flashpca

Fast Principal Component Analysis of Large-Scale Genome-Wide Data

hail

Scalable genetic data analysis.

instant

A std::time::Instant replacement that works on WASM too.

ldsc

LD Score Regression (LDSC)

letsencrypt-mythic-dns01

Hook script for letsencrypt.sh to use Mythic Beasts DNS API

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

pguint

unsigned integer types extension for PostgreSQL

plink-ng

A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Future development will revolve around critical extensions to the core file format (multiallelic variants, dosage, phase).

poetry

Python dependency management and packaging made easy.

poetry-core

Poetry PEP 517 Build Backend & Core Utilities

pysam

Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

python-profiling-tutorial

Profiling Tutorial

rs3

A library interfacing libs3 to R

ruffus

Ruffus is a lightweight python module for running computational pipelines.

rusqlite

Ergonomic bindings to SQLite for Rust

rust-bindgen

Automatically generates Rust FFI bindings to C (and some C++) libraries.

sbpack

Command line utility to pack and upload/download CWL to/from SB powered platform

serde_rusqlite

Serialize/deserialize rusqlite rows