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genergener's Projects

candida_auris icon candida_auris

Supplemental information on Candida auris current state-of-the-art, reference genome patches, and best-practice recommendations.

denovosv icon denovosv

A pipeline for calling de novo structural variants from a trio with Nanopore long read data

masq icon masq

Quality control tool for metagenomic assemblies

scancnv icon scancnv

Creating an awesome tool to perform CNV QC on WES data independent of callers/platform that focuses on confidence and reportability of CNV calls, particularly in clinical data.

swigg icon swigg

A pipeline for making SWIft Genomes in a Graph (SWIGG) using k-mers

virus_graphs icon virus_graphs

Making Representative Genome Graphs from Eukaryotic Viruses and Phages

virusgraphs3 icon virusgraphs3

Solidifying the VirusGraphs Infrastructure for Deployment

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