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brain_rep

This script codes for a predictive algorithm that uses gene expression data of human brain cells and regulatory network information to predict transcription factors for inducing cell reprogramming between specific brain cells and neuronal subtypes.

cartana_segmentationbasedanalysis

Segmentation-based analysis of CARTANA in situ sequencing of 11 genes in the embryonic pancreas.

fastq-dl

Download FASTQ files from SRA or ENA repositories.

gruffi

Granular Functional Filtering (Gruffi) to isolate stressed cells

igfinder

Python script for fetching all the intronless genes of a particular organism.

multik

MultiK is a data-driven tool that objectively assesses the optimal number(s) of clusters based on the concept of consensus clustering via a multi-resolution perspective.

nucpy

scrnsseqsneddon

scRNA-seq analysis of different embryonic stages of the pancreas using the Sneddon dataset.

seurat

R toolkit for single cell genomics bug-fixed

ssamspatialtranscriptomics

SSAM spatial transcriptomics analysis of CARTANA in situ sequencing of 11 genes in the embryonic pancreas.

wt_phd_rotation2

This repository contains the scripts for the analysis done in the study entitled "Investigating the role and action mechanism of PGC1a in SST interneurons".