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2014-05-05-mcmaster

Software Carpentry Bootcamp Repo for McMaster May 5-6 2014

2014-06-04-cornell

Bootcamp Repository at Cornell June 4-5

abc

git clone of http://www.nitrc.org/projects/abc/

allenhumangenemni

Careful multispectral registration of the Allen Human Brain Gene Samples in MNI ICBM NLIN SYM 09c space

alleninf

Compare a statistical map of a brain with gene expression patterns from Allen Human Brain Atlas.

ansible_aggregate_facts

ants

Advanced Normalization Tools (ANTs)

antsr

...

antsregistration-benchmarking

bash3boilerplate

Templates to write better Bash scripts

bc

Template for Software Carpentry bootcamp site repository.

beast

C implementation of Brain Extraction based on nonlocal Segmentation Technique

bib2xhtml

Convert BibTeX references into XHTML

bic-mni.github.io

BIC-MNI homepage

bic-pipelines

Brain Imaging Center Image Processing Pipelines

bicinventor

This package contains MNI interfaces and extensions to Open Inventor.

bicpl

BICPL: The Brain Imaging Centre Programming Library

biglab_ansible

bpipe

Bpipe - a tool for running and managing bioinformatics pipelines

brain-view2

brainparts

NMF Code for calculating components from Brain imaging data.

bru2nii

Bruker ParaVision to NIfTI conversion

bruker

BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data

bruker2nifti

Medical image format converter: from raw Bruker ParaVision to nifti.

build

Cloud builds infrastructure

build_packages

Automatically build minc-toolkit&Co packages using Docker

ccfv3_to_mri

cheatsheets

My cheatsheets

chezmoi-1

Manage your dotfiles across multiple diverse machines, securely.

cit168_left_right

A remapping of the CIT168 subcortical atlas to provide left and right labels