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gashanjakim's Projects

algorithms-explanation icon algorithms-explanation

All Algorithms explained in simple language with examples and links to their implementation in various programming languages and other required resources.

ancient_trichuris icon ancient_trichuris

Analysis of ancient and modern Trichuris trichiuria in collaboration with Martin Soe and Peter Nejum

bioinformatics icon bioinformatics

Algorithms to process genetic sequences in order to get relevant information from them.

cnn icon cnn

Using a Convolutional Neural Network for classifying DNA Sequences

companion icon companion

This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion

convolutional-neural-network-image_recognition_case_study icon convolutional-neural-network-image_recognition_case_study

Computer Vision Case Study in image recognition to classify an image to a binary class, based on Convolutional Neural Networks (CNN), with TensorFlow and Keras in Python, to identify from an image whether it is an image of a dog or cat. (Includes: Data, Case Study Paper, Code)

data-mining icon data-mining

Data mining to discover trends in Open Science in Kenya

docker-builds icon docker-builds

:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics

embopopgen2017 icon embopopgen2017

EMBO Practical Course: Population Genomics: background and tools

fastq-screen icon fastq-screen

Detecting contamination in NGS data and multi-species analysis

freebayes icon freebayes

Bayesian haplotype-based genetic polymorphism discovery and genotyping.

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