Comments (14)
The correct fix should have been:
conda install -c conda-forge -c filipemaia condor
In other developments, a conda package with libspimage will soon be ready.
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I guess we could create an fxihub account on https://anaconda.org/ and create our own fxihub channel (https://conda.io/docs/user-guide/tasks/create-custom-channels.html) to where we could upload different software projects as conda packages?
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Is this already completed?
I found this page: https://anaconda.org/filipemaia/condor
However,
$ conda install -c filipemaia condor
fails for me with:
Solving environment: failed
PackagesNotFoundError: The following packages are not available from current channels:
- condor
I have Ubuntu 16.04.4 LTS.
Thanks in advance for your time.
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Not completed yet... We are still working on this. But good to know that there is interest.
from condor.
Having the package without libspimage could be done relatively soon I think. The libspimage part is more tricky...
from condor.
@angeloziletti There are now packages for linux-64 and osx-64. It would be great to know if they work for you. They however no not have libspimage or spsim. Windows packages are currently impossible as some dependencies (e.g. nfft) do not have Windows packages.
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Thanks for your reply and your work.
I tried again:
$ conda install -c filipemaia condor
And then I get:
Solving environment: failed
PackagesNotFoundError: The following packages are not available from current channels:
- condor
- nfft
I am using Ubuntu 16.04 and Python 2.7, maybe that is the issue.
I should point out that my interest in having condor as conda package (together with its dependencies libspimage and spsim) is that it would make Docker files and Continuous Integration much easier for codes that use condor.
The condor package itself is very easy to install automatically, while installing libspimage and spsim automatically can be tricky (and I need them because I use condor for crystal structures).
I know that this is a lot of work, so I understand if it cannot be done.
Thanks again for your help.
from condor.
Is the system 32 or 64 bits?
And nfft is available from conda-forge:
https://anaconda.org/conda-forge/nfft
from condor.
And you're probably right about Python 2.7 being an issue.
Can you try with Python 3?
from condor.
I have a 64 bits system. I have tried with python3 and it still does not work. I am not sure, maybe I have a broken conda installation.
from condor.
Can you install nfft alone?
conda install -c conda-force nfft
What version of python3 do you have?
from condor.
Ok, I think we a working solution for python3.
If one first install nfft, and then condor:
conda install -c conda-forge nfft
conda install -c filipemaia condor
the installation works. This procedure works for the both python3 version I tried (Python 3.6.6 and Python 3.4.5). Installing condor without first installing nfft fails with the same error as described above.
With python2.7, the same procedure
conda install -c conda-forge nfft
conda install -c filipemaia condor
gives me the following error:
Solving environment: failed
UnsatisfiableError: The following specifications were found to be in conflict:
- condor
- subprocess32
Use "conda info " to see the dependencies for each package.
from condor.
Just to clarify the error happens when you do the conda install -c filipemaia condor
not the conda install -c conda-forge nfft
, correct?
from condor.
The error happens if one tries to install condor without installing nfft first.
One needs first to install nfft
conda install -c conda-forge nfft
and then install condor:
conda install -c filipemaia condor
Installing condor without first installing nfft will results in an error.
from condor.
Related Issues (20)
- Syntax change with NFFT 3.3 HOT 1
- Example PDB file does not match with spsim parsing of atomic number HOT 1
- Online Condor not up to date HOT 1
- Missing polarisation correction in the simulations
- Solid angle differs from dragonfly
- Codec error when trying to create conda package
- qmap_cache not populated when simulating from atoms
- can not import spism module HOT 2
- Difference in signal for the same molecule using particleAtoms (with PDB-file) and ParticleMap (with meshgrid) at q=0 HOT 6
- Typo in particle_map.py? HOT 1
- Might want to enforce that input to NFFT has even dimensions HOT 2
- Exception when calling get_radius_of_gyration
- Windows support
- Issue in condor/utils/resample.py HOT 1
- Can not import nfft module HOT 7
- Is Python 3.9 supported? HOT 6
- Misspelled variable name HOT 2
- run on windows HOT 2
- online use of condor HOT 1
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