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Zichang Xu's Projects

ai-edu icon ai-edu

AI education materials for Chinese students, teachers and IT professionals.

bm5-clean icon bm5-clean

Docking benchmark 5 - cleaned and ready to use for HADDOCK

d2l-zh icon d2l-zh

《动手学深度学习》:面向中文读者、能运行、可讨论。英文版即伯克利“深度学习导论”教材。

dockq icon dockq

DockQ is a single continuous quality measure for protein docked models based on the CAPRI evaluation protocol

dove icon dove

A Deep-learning based dOcking decoy eValuation mEthod

handson-ml icon handson-ml

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.

handson-ml2 icon handson-ml2

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

lightdock icon lightdock

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

lihang icon lihang

Statistical learning methods, 统计学习方法(第2版)[李航] [笔记, 代码, notebook, 参考文献, Errata, lihang]

memcplxdb icon memcplxdb

Membrane protein complexes docking benchmark

mixcr icon mixcr

MiXCR is a universal software for fast and accurate extraction of T- and B- cell receptor repertoires from any type of sequencing data. Free for academic use only.

mview icon mview

MView extracts and reformats the results of a sequence database search or multiple alignment.

pdb-tools icon pdb-tools

A dependency-free cross-platform swiss army knife for PDB files.

proqdock icon proqdock

ProQDock is a Protein-Protein docking scoring program that uses high level coordinate driven features compiled and trained by a Support Vector Regression algorithm. The current version has 13 features: both all-atom and interface features. ProQDock should also serve to develop hybrid methods in future attempts to solve this 'hard' problem.

protein-alignment-tool icon protein-alignment-tool

BRAT shows key residue (e.g., ligand-binding) correspondences between sequence-divergent homologs aligned by structural superposition. BAT displays residues and their numeric properties (from the B-value column) of PDB structures, given their structural superposition.

pyrosetta.notebooks icon pyrosetta.notebooks

Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design

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