Comments (2)
LRR is usually not reliable on the sex chromosomes, so yes, mLOX and mLOY events are identified regardless of how MoChA classified them based on LRR
The .cll.lines
is an example of how to enrich for mCAs typical of CLL, but it is not supposed to be the end-all on the topic. It is more like a suggestion
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Oh that's very helpful! Thank you so much!
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Related Issues (20)
- query about calling CNV with multi-samples HOT 1
- Conceptual Confusion about CNV and mCA HOT 2
- check bpm or not HOT 2
- Could not parse gender (0/1/2) in the sample statistics file HOT 2
- Written 0 variants for all contigs HOT 1
- GC content in VCF file HOT 2
- The sequence "hs37d5" not found and "No BGZF EOF marker" errors HOT 1
- Any suggestions on filters for downstream analysis? HOT 2
- Imputation Error - terminate called after throwing an instance of std::length_error HOT 1
- no mLOY result but normal mLOX and mCA of male in autosomes HOT 6
- mochatools input format HOT 3
- Unable to infer the A and B alleles while parsing the site... HOT 11
- Incomplete LOH call(s) on Chr12p HOT 10
- genetic map grch38 HOT 1
- Use combined 1kG and HRC as reference panel for imputation HOT 1
- Error [E::bgzf_read_block] Invalid BGZF header at offset 85619 HOT 1
- eLRR: Clarifcation on LRR adjustments HOT 6
- Can I Use CEL Files from Axiom Precision Medicine Research Array (PMRA) Release 3 to Generate CHP Files and Obtain VCF Files Annotated with GC, BAF, and LRR Content? HOT 8
- imp5Converter Output file format is not supported HOT 7
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