frankkramer-lab Goto Github PK

aucmedi

a framework for Automated Classification of Medical Images

convnext-unet

covid19.miscnn

Robust Chest CT Image Segmentation of COVID-19 Lung Infection based on limited data

cx-typescript

Web based tools to validate CX-files

deepgleason

a System for Automated Gleason Grading of Prostate Cancer using Deep Neural Networks

drnote

DrNote is an open tagging tool for text annotation and entity linking based on OpenTapioca and WIkiData/Wikipedia. It provides an entity linking service with pre-trained data for medical annotations in multilingual settings. The processing of raw text as well as PDF by a tesseract backend is supported.

ensmic

An analysis on Ensemble Learning optimized Medical Image Classification with Deep Convolutional Neural Networks

fair-aligned-etl-pipeline-solution

Automated ETL pipeline for clinical study data

fhir-qr-explorer

Client-based web application prototype for interactive FHIR Questionnaire Response (QR) analysis and visualization.

fhirgraph

A graph datatype structure definition for FHIR® (Fast Healthcare Interoperability Resources [hl7.org/fhir])

gene-expression-on-fhir

Implementing semantic interoperability of gene expression profiles using the HL7 FHIR standard

gernermed

GERNERMED is the first open neural NER model for medical entities designed for German data.

gernermed-pp

GERNERMED++ is a transfer-learning-based open neural NER model for medical entities designed for German data.

glioblastoma-survival-prognosis-via-image-classification

gptnermed

GPTNERMED is a language model-generated, synthetic dataset and an open neural NER model for medical entities designed for German data.

kimcare

A toolset to transfer files via the KIM component of the German Telematik-Infrastruktur using Apache NiFi.

metarelsubnetvis

miscnn

A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

miseval

a metric library for Medical Image Segmentation EVALuation

miseval.analysis

Source code for the publication: Towards a Guideline for Evaluation Metrics in Medical Image Segmentation

misitcms

Contest Management System

misitcms-app

MISITcms - Assignment/Contest Management System for automatic code evaluation of students

mully

R package to create, modify and visualize graphs with multiple layers.

multipath

Integrating pathways and related knowledge in a multilayer framework

multipath2neo4j

ndexedit

Web-based editing of biological networks from the NDEx platform

ndexr

R client library for NDEx

nucls.miscnn

Nucleus segmentation and analysis of breast cancer using the MIScnn Framework and the NuCLS dataset.

nursing-quality-indicators-in-german-fhir-implementations

Evaluation of the Availability of Nursing Quality Indicators in German FHIR Implementations

pacs2go

Towards a Portable Research PACS for Interdisciplinary Collaboration