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advanced-bioinformatics-course

This course provides an end-to-end in-depth exploration of bioinformatics analysis of genomic data.

adventofcode_2020

My programming puzzles solutions

appris_rnaseq

Snakemake pipeline to perform a high-performance batch RNA-seq quantification

chest-x-ray-with-radiologist-ai

This repository is intended to diagnose pulmonaries pathologies by using DL tools.

cmdc-structuralbioinformatics

Complete tool which calculates correlated mutations and distance correlations to predict aminoacid interactions. It also contains standalone scripts of mutual information calculation and contact map

covid-rt

Using bayesian statistics to see what is really happening with the SARS-CoV-2 virus one month after COVID19 pandemics start

cxr-img-classifier

An extremely user-friendly Chest X-Ray image classifier using PyTorch Lightning, Hydra and a custom logger with ML best practices.

d3_challenge

Protein–ligand docking protocol

data-driven-project-template

Bringing together both commonly used scripts and a data related project structure

dotfiles

fpozoc's shell, zsh, tmux, git, config files and some stuff for migration

e2e_python_template

This project intends to provide end to end workflow template for Python projects

eccb-22

Materials for the presentation at 21st European Conference on Computational Biology (ECCB)

extractgfffeatures

Extracting GFF Features from sequences and calculates its GC content.

fpozoc

fpozoc.github.io

hp-pfamscan

HPC implementation of PfamScan

ismb-presentation

Video presentation and poster session prepared for the annual International Conference on Intelligent Systems for Molecular Biology (ISMB) in 2021

ml-engineer-interview-task

Predicting rental prices with Machine Learning and Natural Language Processing

ml-project-template

Bringing together both commonly used scripts and a data related project structure

naive-bayes-classifier

A predictive Naïve Bayes Model classifier which try to predict brain regions from its subsequent Splicing Events in Human Genome (GTEX project)

nf-exec

Tools to reproduce the steps to run nf-core pipelines for bioinformatics analysis within Linux environments.

phosphoproteomics

Some phosphoproteomics useful notebooks and sources

pyops

Python Project template designed for a cool variety of projects

qsplice

Quantifying splice junctions coverage from data released by STAR and mapping it to genome positions.

ratt2coords

Approaching for a whole Genome Annotation tool. It was created in order to solve some of the requirements of a particular wet-lab

trifid

Machine Learning-based tool to assess the functional relevance of splice isoforms.

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