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acqpack

Code to perform acquisitions (experiment automation and hardware control).

adam2

Adam 2.0 - Hybridization Oligo Design Utility

bet-seq

chipshot

Chromatin Immunoprecipitation (and sequencing) Shape/Occupancy Toolset

cloud_scripts

Configuration scripts for cloud servers

daceg

Directed Acyclic Experimental Computational Graphs

designquikchangeprimers

Batch design of any number of QuickChange primers, including hairpin Tm calculator (using primer3-py)

dockerized_featurereduce

Docker file and tutorial for generating and using FeatureREDUCE inside a docker container

evzoom

Visually explore covariation in protein families

fordycelab.github.io

Fordyce lab research blog

geppetto

Python-based control module for microfluidics pneumatics setups

geppetto-cli

Command line interface to automate control of pneumatic setup

ht-mek_kineticthermodynamicfitting

Higher order kinetic analysis: Michaelis-Menten, inhibition fitting, data aggregation, and statistics

htmek-workup

Notebooks for higher order HT-MEK data processing written in python

imagestitcher

RunPack and MicroManager image stitching, flat-field correction, and background subtraction

kyle2

REDI assay library design

magnify

A microscopy image processing toolkit.

matlab_fordycelab

micrio

Open-source autosampler and fraction collector for microfluidic applications

microwellprocessor

microwellprocessor_old

Process stitched microwell images to extract subarrays

microwellstitcher

Stitch rastered arrays of microwell images

mitomi-geppetto

Example MITOMI files for running Geppetto

mitomi_analysis

Analysis package for the MITOMI project

mitomianalysis_software

Version control for MATLAB GUI paper

mrbles

Decoding and analysis software for MRBLEs (Microspheres with Ratiometric Barcode Lanthanide Encoding).

open_source_pneumatics

An Open-Source, Fully Programmable Pneumatic Setup for Universal Microfluidic Operation and Automated Control

pneumaticcontrol_matlab

MATLAB Pneumatic Control

processingpack

HT-MEK Image Processing

processingpack-stammp

Image processing for high-throughput microfluidic experiments via STAMMP