Wayne's Bioinformatics Code Portal's Projects
3D scatter plot examples via Binder
Playground to test 3D scatter plot examples in modern JupyterLab and Jupyter Notebook via Binder
3D surface plot examples via Binder
Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer) made to work with the MyBinder service.
Binderizing Nicolas' remake of necessary disorrder beautiful animation
Notebook to demonstrate animated plots with Matplotlib in JupyterLab and Jupyter Notebook 7+ served via MBinder system.
Notebook to demonstrate animated plots with Matplotlib in classic Jupyter notebook interface & NbClassic served via MyBinder system.
Easily animate PyMOL session scenes with Jmol to create an animated GIF.
Jupyter Lab Notebook for API Logic Server
Creating web applications with Jupyter and Binder
'for the future when the camera crew wants B-roll and asks you to sit at your desk "doing bioinformatics"'
Conversion of the HTML representation of Jupyter notebook back to an `.ipynb` file
Comparison tools
Bend.it software to predict DNA curvature combined with Jupyter ecosystem served via MyBinder.org
Bernhard10's personal fork of biopython where he added parsing of missing residues from PDB header
binderized Bigdft stuff - see https://stackoverflow.com/a/78868235/8508004
Adds binder to tidyverse, providing JupyterHub
Using RStudio served via Binder that runs with my favorite bioinformatics packages.
Using RStudio served via Binder that runs the gwascat package
running ridgeline plots in R in Jupyter environment served by MyBinder.org
launchable, working Jupyter-baseed environment with bio3d package for Biological Structure Analysis running in RStudio with some examples
Details of compatibility of software commonly used in tandem
bioptools available in Jupyter session served via myBinder.org
Official git repository for Biopython (originally converted from CVS)
Notebooks to introduce biopython
attempt to make binderized BIRCH, see http://home.cc.umanitoba.ca/~psgendb/