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β“Ώ Hi there πŸ‘‹

Senior Scientist at IIMCB in Warsaw, with PhD in Organic Chemisty and seven years of experience in Pharma Industry R&D (MedChem and Computer Aided Drug Design). Currently working on data-driven computational methods for RNA-small molecule ligands.

  • Computing since 1988 (Timex)
  • Programming since 1989 (BASIC and logo 🐒)
  • Chemistry since 1990 (water electrolysis)
  • In the internet since 1994 (EARN and Bitnet, gopher and telnet)
  • Linux since kernel 2.0.39 (freesco)
  • Machine learning since 2010 (Decision Trees and KNIME 2.3.0)

❢ Science 🧬

Google Scholar record | orcid: 0000-0001-5758-9416

ⓐ RNA-ligand interactions

  • Binding mode prediction with new scoring function AnnapuRNA. Combination of statistical data extracted from X-ray structures and Machine Learning.
  • RNA-ligand Interaction detection and classification with fingeRNAt.
  • Structural Interaction Fingerprints and Machine Learning for predicting and explaining binding of small molecule ligands to RNA.

β“‘ Protein-ligand interactions & proteins

  • Tox21 challenge - Prediction of Compounds Activity Using ML and Low-Dimensional Molecular Descriptors
  • Predict Protein Stability Index (PSI) from the sequence with ML regression

❷ After-hours science βš—

  • Indoor cat localization using Bluetooth beacons and Machine Learning 🐱.
  • autowx2 - a set of programs and scripts for schedule satellite and ground recordings with SDR dongle. Bundled plugins include scripts for processing weather APT images from NOAA or METEOR satellites, ISS voice communication recordings, and more πŸ“‘ .
  • Statistics of mass-running events (from 5K to marathons)

❸ Tools πŸ› 

  • Console monitor for mqtt stream, with colors and filters
  • telegraf2rrd - pass data from telegraf to RRD database.

❹ Training materials πŸ“–

  • How to link GitHub repositories with Zenodo to get a DOI and comply with NCN rules
  • Training materials for students of Computer Aided Drug Desing at WUT

Check Markdown links

filips's Projects

annapurna icon annapurna

AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.

autowx icon autowx

Automated reception & decoding of polar passing weather satellites

autowx2 icon autowx2

The program for scheduling recordings and processing of the satellite and ground radio transmissions (like capturing of the weather APT images from NOAA satellites, voice messages from ISS, fixed time recordings of WeatherFaxes etc.) :earth_africa: :satellite:

bashids icon bashids

Pure Bash implementation of the hashid algorithm from http://hashids.org/

cadd-pw icon cadd-pw

Computer Aided Drug Design / Komputerowe Wsparcie Projektowania LekΓ³w

cadd-vizja icon cadd-vizja

MateriaΕ‚y do przedmiotu Computer Aided Drug Design

cat-localizer icon cat-localizer

Localize your cat at home with BLE beacon, ESP32s, and Machine Learning

fingernat-ml icon fingernat-ml

Data accompanying the manuscript on SIFts- and ML-based methods in Virtual Screening for RNA binding ligands.

heatmap icon heatmap

Python script for generating high quality heatmaps based on any coordinate data (GPS tracks, eye tracking, etc). This version supports also sqlite databases as a data source :tada:

lmds icon lmds

A multidimensional scaling (MDS) and landmark multidimensional scaling (LMDS) implementation

ncn-github-oa icon ncn-github-oa

How to deal with NCN Open Access rules and GitHub repositories

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