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Hello, I'm Felix 👋🏻

I'm a Bioinformatician at Cardio-CARE Davos in Switzerland. My research interests center around the development of novel methods for assisting in large-scale phylogenetic studies but my interests within bioinformatics are broad. Here are some of the tools that I've developed over the years.

Projects

  • Patchwork — An alignment-based program for mining phylogenetic markers from whole-genome sequencing data
  • PhyloPyPruner — Tree-based orthology inference with decontamination filters and elaborate statistics
  • Better FASTA Grep — Grep-like tool for searching and retrieving sequence records

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Felix Thalén's Projects

better_fasta_grep icon better_fasta_grep

A Grep-like tool for retrieving matching sequence records from a FASTA file.

orthoquoll icon orthoquoll

A stand-alone tool for evaluating simple statistics of orthologs

papaya icon papaya

A Visual Studio Code port of HenryNewcomer's Vim theme

patchwork icon patchwork

Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data

phylopypruner icon phylopypruner

Tree-based orthology inference with functionality for reducing contamination

seqexchange icon seqexchange

Simulate cross-contamination and a high paralogy count in sequence data

symbiontdivider icon symbiontdivider

An easy to use pipeline to separate endosymbiont genomes from their host's

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