Comments (2)
Hi,
We usually use Graphviz (https://www.graphviz.org/) for visualization:
dot -Tpng -O graph.dot
I will take a look at Gephi and see if the problem is on our side. We are also now working on a custom interactive visualization - probably will include it into the next release. Finally, there is graph in .gfa format in the "2-repeat" folder, which could be visualized with Bandage.
from flye.
Finally checked Gephi - it seems it does not fully support Graphviz language (custom edge attributes in particular). So Graphviz is the way to go for now.
from flye.
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from flye.