Comments (2)
Hi,
At the step 4 here, UnprocessedReads
will contain reads fully contained in B
(as you said), but it will also contain reads that start in R
and end in B
, and likewise reads that start in B
and end in R
(since these reads are not contained in full in the ARC
path). So, during the step 6, you will assemble B
, but the contig will also contain flanking sequence from R
. This will allow to connect B
and ARC
parts in the graph (and reveal the repeat).
It's nice to meet a friend of Bahar! Thanks for letting us know, we will fix this as soon as possible.
from flye.
Thanks for the explanation, Mikhail. I appreciate it. Say hi to Bahar from me!
from flye.
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from flye.